PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_7A127A218.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 208aa    MW: 23991 Da    PI: 6.1769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_7A127A218.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-161202001199
                            HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             ++  l +p +f  eh     +++ ++l de+ ++++v +  r +s++  l +GW+eF+ +n+L egD +vF+l++r  f  +v +fr
  Traes_2AS_7A127A218.1 120 QSLTSLHIPAQFSMEHLP--DNGMRMVLVDEEEEEFKVSY--RPHSSS--LVAGWSEFAIDNELVEGDCLVFQLIKRALF--KVYIFR 199
                            4445589*****999953..36899***************..999988..889**********************98888..999999 PP

                            S CS
                     B3  99 k 99 
                            +
  Traes_2AS_7A127A218.1 200 A 200
                            7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-21107201IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-20108201IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603110201IPR003340B3 DNA binding domain
CDDcd100171.56E-21112199No hitNo description
SMARTSM010191.1E-15114201IPR003340B3 DNA binding domain
PfamPF023621.3E-13118200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PKLKRKAPKP WDAADDAPPR  60
RSGRIATLPE QPDYRDNLGT GKPRQQKEVK PDHAYAIAKA EELQDELGSD YPTFVKPMPQ  120
SLTSLHIPAQ FSMEHLPDNG MRMVLVDEEE EEFKVSYRPH SSSLVAGWSE FAIDNELVEG  180
DCLVFQLIKR ALFKVYIFRA SSYYENEH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743460.0AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158478.11e-144B3 domain-containing protein Os06g0194400-like
SwissprotQ69V362e-70Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A3B6ATC11e-152A0A3B6ATC1_WHEAT; Uncharacterized protein
STRINGTraes_2AS_7A127A218.11e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]