PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_506D953C1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 419aa    MW: 47070.1 Da    PI: 5.7581
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_506D953C1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.91.5e-56211363117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e
  Traes_2AS_506D953C1.1  21 QEaQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGE 108
                            5559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            en++fqrr+ywlLee + +ivlvhyle 
  Traes_2AS_506D953C1.1 109 ENENFQRRTYWLLEEGFMNIVLVHYLEI 136
                            *************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.10316142IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-5122135IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAEMHKYGLS NQPPDIPQIL QEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHIWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEIKGGK QSFSRSKEAE DSPACSNSFA SQSQVASQTM DAESPYSGQI  180
SEYEDAETDN SRASSRYHPF VEMQQPVDGV MMDNRLGAPA PSTSVNNLGY QDENQASTAN  240
ISNNFVTHHG IASVFNDVGA GLRSGSKTAL DSVHFGEPFP EYPTGFTEPT LYSSVTTMGS  300
NNLDDNSRLE TLMTEALYTN NLTQKETDAL SAAGMTSSQV LCSFFPLIFL CHEMFVSVWQ  360
SCNFSTLALL CAYCRVLETI CRGIGRSFLL CFVIGLLHYT SVYLIALCNL EFPYNVPMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002377e-60FP100237.1 Phyllostachys edulis cDNA clone: bphyst001c17, full insert sequence.
GenBankFP0935317e-60FP093531.1 Phyllostachys edulis cDNA clone: bphyem002j22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235561.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
SwissprotQ6NPP49e-73CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLW5B1C20.0W5B1C2_WHEAT; Uncharacterized protein
STRINGMLOC_63299.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.26e-74Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]