PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_EA60A06AC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 553aa    MW: 59624.5 Da    PI: 10.4134
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_EA60A06AC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1263.9e-391773153131
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssasn 84 
                            g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++     ++ +as++ +++ss   a++
  Traes_2AL_EA60A06AC.1 177 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELdaaafPNHPASASaNKQSSALHAEA 264
                            78*************************************************************8887744444444444444444444 PP

                    TCP  85 sssg...kaaksaakskksqksaasalnlak.esrakarararertrekmr 131
                            ++s+   ++ + + +s+ s++s+ s+l+l++ +sr kar+rar+r+++ + 
  Traes_2AL_EA60A06AC.1 265 DGSQlqqQQLTRSGCSSTSETSKGSVLSLSRsDSRVKARERARDRSASVKD 315
                            444466566677779999**************************9887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-40177313IPR005333Transcription factor, TCP
PROSITE profilePS5136932.112178236IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.504296316IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
IEWYAPTASF RTPPSSSLIK SGDLSLPPSL HRLLSSYSHS TSPLSLPPSP RRAPSTPLPS  60
PQGAHGIARR SVPPIPRARL PLPASPRRPA WLNFATNALW VGHERHWRRL AGGPIHIRME  120
LSVAAAAVEL GKRGRPEDQD HDQEQDHGDA KRLALVPWPP HQQHPSSRIY RVSRGSGGKD  180
RHSKVYTAKG IRDRRVRLSV ATAIQFYDLQ DRLGYDQPSK AVEWLIKAAA AAIDKLPELD  240
AAAFPNHPAS ASANKQSSAL HAEADGSQLQ QQQLTRSGCS STSETSKGSV LSLSRSDSRV  300
KARERARDRS ASVKDKDDSV TAAVRRRAPS AQAASFTELL TGLAAATPAV AQHKQHNSWQ  360
QMTASATADY LGFSQPRKSG HGMLHTFASP APHLGNIVPV AMAPAQHFSL SAGGGDSQTD  420
MPHFSFSQDH YMPVHAAPAS APAVDYSLNF SMCSGLVGVN NTRGTLQSNS QPHLSGHHHH  480
QQQLQRLSTP LDAPHIPFLF SPAVAVASPT TAESHFGAAA ALQLWEGFRH SXRHEGEGQE  540
LINGCALLLD AGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-26183237155Putative transcription factor PCF6
5zkt_B8e-26183237155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703480.0AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165443.10.0transcription factor PCF6-like
TrEMBLA0A3B6AYU10.0A0A3B6AYU1_WHEAT; Uncharacterized protein
TrEMBLA0A446KZ320.0A0A446KZ32_TRITD; Uncharacterized protein
STRINGTraes_2AL_EA60A06AC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]