PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_7A37B5232.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 210aa    MW: 22776.7 Da    PI: 8.8892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_7A37B5232.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-141764355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++Lq
  Traes_2AL_7A37B5232.1 17 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVRELQ 64
                           58*************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7131463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-141770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-131764No hitNo description
PfamPF000107.0E-121764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-151766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-132069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MATDGECSTP GKGATVRSHS EAERKRRQRI NAHLATLRTL VPSASRMDKA ALLGEVVRHV  60
RELQGRANDA TEGVVDVVPG ETDEVGVEEG DYINGGSTDD DPRWRRRVRA WVCCADRPGL  120
MSDLGRAVRS VGSARPVRAE IATVGGRTRS VLELDHVYLQ AEPANDRAVA LSTLRAALRT  180
VLLNREELLA AAAAVDGYKR PRLSPVHQLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279687e-43KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197761.11e-106transcription factor AIG1-like
TrEMBLA0A3B6B4T01e-147A0A3B6B4T0_WHEAT; Uncharacterized protein
TrEMBLA0A446LH151e-147A0A446LH15_TRITD; Uncharacterized protein
STRINGTraes_2AL_7A37B5232.11e-147(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.14e-16bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]