PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_5BA7E2623.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 312aa    MW: 33632.1 Da    PI: 7.1693
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_5BA7E2623.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.7e-144292155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+ +++a+ k +g
  Traes_2AL_5BA7E2623.1 42 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 92
                           89********.7******5553..2.26**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.60E-2542102No hitNo description
SuperFamilySSF541711.11E-1742101IPR016177DNA-binding domain
PfamPF008474.5E-104292IPR001471AP2/ERF domain
SMARTSM003801.3E-3343106IPR001471AP2/ERF domain
PROSITE profilePS5103216.18643100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1643100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEADINFSLE DYDDIKQMGN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG  60
QFLGKKYVYL GLFDTEEEAA RSYDRAAIKC NGKDAVTNFD PSTYAEEFEP AASTGDAEQN  120
LDLSLGSSGG SNKRGSLDGG GGDDEGAAGS DQRVPMAFEL DWQTARSTKA KFDQNSTHRQ  180
MPPPALQASH MAFSPRQHQF MGSADPGTAG GLSLTVGAGA GGLAGHWPPH HQYQPPPPPQ  240
QQQRMHGWGN VVPGRSWQPP QPPPHHQAGP PPNNAAAAAA AAAASSRFPP YIAAQAQSWL  300
QKNGFHSLAR PT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601490.0AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04.
GenBankAK3719530.0AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161606.11e-171AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AVJ91e-134APL25_ORYSI; APETALA2-like protein 5
TrEMBLM5AAY80.0M5AAY8_9POAL; TaAP2-A
TrEMBLM5AB350.0M5AB35_WHEAT; TaAP2-A
TrEMBLM5AB580.0M5AB58_WHEAT; TaAP2-A
STRINGTraes_2AL_5BA7E2623.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-65AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]
  2. Ning S, et al.
    Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1.
    Theor. Appl. Genet., 2013. 126(5): p. 1273-83
    [PMID:23381807]