PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_25382F498.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 274aa    MW: 31673.6 Da    PI: 10.1534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_25382F498.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3924.3e-2936140198
                            EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            f+k+ltpsdv+k++rlv+pk++ae++             ++  l++ede ++ W+++++y+ +s++yvltkGW+++vk+++L++gD+v
  Traes_2AL_25382F498.2  36 FEKTLTPSDVGKLNRLVIPKQHAERYfplnggdsP--GDKDLLLSFEDEASKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIV 121
                            99****************************76332..235667999****************************************** PP

                            EEEE-SS.SEE..EEEEE- CS
                     B3  81 vFkldgr.sefelvvkvfr 98 
                             F++++   ++  ++  +r
  Traes_2AL_25382F498.2 122 HFERVRGlGTGDRLFICCR 140
                            ***8866544444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-3930148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2833135IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-2734128No hitNo description
SMARTSM010192.4E-2236143IPR003340B3 DNA binding domain
PfamPF023621.2E-2636141IPR003340B3 DNA binding domain
PROSITE profilePS5086313.11236142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAMHHLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKTL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP GDKDLLLSFE DEASKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDI  120
VHFERVRGLG TGDRLFICCR RRGKSALPPP VRVSPPALNA GEQQPWSPMC YSTSGSYPTS  180
PANSHAYRRS VEQDHSDMLH LTPFSGEFLQ VTRRERQMPR AVRHRGRRRD VSGCSESTST  240
AVRSQRQRQQ RQCTTTPTRA PTLQWSRCQL TGQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-48311443115B3 domain-containing transcription factor NGA1
5os9_B5e-48311443115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195164.11e-132B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-99Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A287QXP01e-159A0A287QXP0_HORVV; Uncharacterized protein
STRINGTraes_2AL_25382F498.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.26e-50B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]