PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_55E91A134.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 655aa    MW: 69841.4 Da    PI: 9.6485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_55E91A134.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.21.1e-16485531455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Traes_1DS_55E91A134.2 485 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 531
                            5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-20479538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-18484535No hitNo description
SuperFamilySSF474592.09E-20484559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-14485531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
PPDRDRWGDG QTVRQQTGRG LAARAPPLSI AVPAIYSTAR RAPPTSSSRC PSPTRAASLG  60
INGDASLGGA SLFLNCSPLT HAHRIQTALL RVGALLLLLH PSFPAAAAPL VTRDGKRGDK  120
IILRQPRRGV GRATPVAAGA GRSPSFIYPH RPGMSEPGNE LEELLWDNGP ALRRTASPFP  180
PFSCSAAGTM KAQELAKHPA SATAMAHGHD DDAVPWLQHY PIIGVDDDGS GGDTAPLPQE  240
YFSTLFPGFS DLPAAVASRD AGAPSTSHAA VVVPPLPEPP APPKQQQPPP RTTGEGVMNF  300
SFFSRPLQRS LPQASVRPSA AGNKSVESML LQTNRLRSTP LFSEQRTAWL HPPKESPATA  360
SASRPPAPPV PVRHAAEPAA ALPQRLQPEA RAAALPPRLQ PEVRAVALPQ RLQSEARASE  420
MPPPPATATT SSVCSDNGER SQLKRSSHQT LEWSVSQDDE DLDDEAGGLR RSAARSTKRG  480
RTAEVHNMSE RRRRDRINEK MRALQELIPN CNKIDKASML EEAIEYLKTL QLQVQMMSTM  540
GTAGLCMPPM MAMQHMQMPP MAHFHHHHLG AMGFGMGAFD PRLVAAAGAA QFPYPMMPGA  600
PMFGAHAMPP PPPFHQAAVA GAHMAAGPVT NDAATAAQAE HEQTPGDHPQ VPRAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597000.0AK359700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164967.10.0transcription factor APG-like
SwissprotQ6AT901e-76APG_ORYSJ; Transcription factor APG
TrEMBLA0A3B5ZQ700.0A0A3B5ZQ70_WHEAT; Uncharacterized protein
STRINGTraes_1DS_55E91A134.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]