PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_2BB06F54C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 511aa    MW: 55674.9 Da    PI: 7.1076
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_2BB06F54C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17182231155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Traes_1DS_2BB06F54C.1 182 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 231
                            78*******************......55************************997 PP

2AP240.38.1e-13274324155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Traes_1DS_2BB06F54C.1 274 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 324
                            89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-16182240IPR016177DNA-binding domain
PfamPF008476.0E-9182231IPR001471AP2/ERF domain
CDDcd000188.73E-11183241No hitNo description
Gene3DG3DSA:3.30.730.103.8E-17183240IPR001471AP2/ERF domain
PROSITE profilePS5103217.794183239IPR001471AP2/ERF domain
SMARTSM003803.3E-32183245IPR001471AP2/ERF domain
PfamPF008476.1E-8274324IPR001471AP2/ERF domain
CDDcd000189.02E-24274334No hitNo description
SuperFamilySSF541711.24E-16274333IPR016177DNA-binding domain
PROSITE profilePS5103215.277275332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15275332IPR001471AP2/ERF domain
SMARTSM003801.9E-31275338IPR001471AP2/ERF domain
PRINTSPR003675.7E-6276287IPR001471AP2/ERF domain
PRINTSPR003675.7E-6314334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF  60
SILRSSASAE GENDVGADDD EEEATPSPPP PPPRHYHQHL LQPQQLVTQE LFPAAAAAGG  120
PPPMPVPQHW AELGFFRPAA PPPDMRILQL QQQQAHAPPP PPPPAQPPVA KKSRRGPRSR  180
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL  240
SDYEDDMKQM KGLSKEEFVH VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI  300
YLGLFDNEVE AARAYDKAAI KCNGREAVTN FEPSTYDAEL LNEVAAEGAD VDLNLSISQP  360
TSQSPKRDKS SLGLQLHHGS YEGSELKRPK VDAPPEMVAI PHRYPLLTEH PPIWHGQSYP  420
LFLNNEEAAR DHSRRPEVAT GAVPTWAWRV SHPPPTQPMP LFSSSSSAAA SSGFSKTAAA  480
AAPGAPSASF RFDPMAPSSS SSNQHHHHHP R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4738230.0JX473823.2 Triticum aestivum cultivar Zhoumai 18 starch negative regulator RSR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A3B5ZQJ50.0A0A3B5ZQJ5_WHEAT; Uncharacterized protein
STRINGTraes_1DS_2BB06F54C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-101related to AP2.7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]