PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_1806CFE5F.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 229aa    MW: 26108 Da    PI: 8.2317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_1806CFE5F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-1985174198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k++++s+v++  +l lp +f+++h  ++ ++ +++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l + +
  Traes_1DL_1806CFE5F.1  85 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPD 166
                            89*********************9994.44.4459***************..555444..***********************98767 PP

                            EE..EEEEE- CS
                     B3  89 efelvvkvfr 98 
                            +f  ++ +f+
  Traes_1DL_1806CFE5F.1 167 RF--KIYIFK 174
                            77..777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2277175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2578174IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-2783174No hitNo description
PROSITE profilePS5086312.77485176IPR003340B3 DNA binding domain
PfamPF023621.0E-1785174IPR003340B3 DNA binding domain
SMARTSM010191.5E-2385176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
RASPKSRKKF EATTEVRRSS RARTTVSYKD DFPELDDFVR RRRVSKSVHS GRGYTGRISS  60
YQQQQRAFKR AEKLQDSLDP DNPSFVKTMV RSHVSSCFWL GLPSSFCKDH LPPREHKMVL  120
EDEEGVEFDA VYIGNRTGLS GGWRGFSMHH DLEDGDSLVF ELAEPDRFKI YIFKAIEDGK  180
EAEPNDNNAD VDSDSAQEVP DQTDSPVSEP PSSPEPLKGA KRRKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222LKGAKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719300.0AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158104.11e-169B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-115Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A3B5ZY001e-168A0A3B5ZY00_WHEAT; Uncharacterized protein
STRINGEMT050211e-165(Aegilops tauschii)
STRINGTraes_1DL_1806CFE5F.11e-168(Triticum aestivum)
STRINGTraes_1DL_1806CFE5F1.11e-168(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]