PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_E68807072.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 512aa    MW: 55729.9 Da    PI: 6.9675
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_E68807072.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.6e-17184233155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Traes_1BS_E68807072.2 184 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 233
                            78*******************......55************************997 PP

2AP240.38.1e-13276326155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Traes_1BS_E68807072.2 276 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 326
                            89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-9184233IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-16184242IPR016177DNA-binding domain
SMARTSM003803.3E-32185247IPR001471AP2/ERF domain
CDDcd000186.82E-11185243No hitNo description
PROSITE profilePS5103217.794185241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-17185242IPR001471AP2/ERF domain
PfamPF008476.2E-8276326IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16276335IPR016177DNA-binding domain
CDDcd000187.29E-24276336No hitNo description
SMARTSM003801.9E-31277340IPR001471AP2/ERF domain
PROSITE profilePS5103215.277277334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15277334IPR001471AP2/ERF domain
PRINTSPR003675.7E-6278289IPR001471AP2/ERF domain
PRINTSPR003675.7E-6316336IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF  60
SILRSSASAE GENDVGADDD EEEATPSPPP PPTRHYHQHL LQPQQLVTQE LFPAAATAGG  120
PPPMSVPQHW AELGFFRPAA PPPDMRILQM QQQQLQVHAQ PPPPPAAQPP VAKKSRRGPR  180
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF  240
NLSDYEDDMK QMKGLSKEEF VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK  300
YIYLGLFDNE VEAARAYDKA AIKCNGREAV TNFEPSTYDA ELLSEVAAEG ADVDLNLSIS  360
QPTSQSPKRD KSSLGLQLHH GSYEGSELKR PKVDAPPEMV AIPHRYPLLT EHPPIWHGQS  420
YPIFLNNEDA ARDHSRRPEV ATGGVPTWAW SVSHPPPTQP MPLFSSSSSA AASSGFSKTA  480
AAAAPGAPSA SFRFDPMAPS SSSSNQHHHH PR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4738230.0JX473823.2 Triticum aestivum cultivar Zhoumai 18 starch negative regulator RSR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLW5ABU90.0W5ABU9_WHEAT; Target of EAT1-B1
STRINGTraes_1BS_E68807072.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-101related to AP2.7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]