PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_D1FCBFBE8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 506aa    MW: 54335.5 Da    PI: 7.0285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_D1FCBFBE8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.6e-17336382455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Traes_1BS_D1FCBFBE8.1 336 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 382
                            5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-20330389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-18335386No hitNo description
SuperFamilySSF474591.44E-20335410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MLLRRSEPGN ELEELLWDNG PALRRAASPF PPFSCSAAGT MKAQELAKHP ASATAMAQGH  60
DDDAVPWLQH YPIIGVDDDG SGGDTAPLPQ DYFSTLFPGF SELPAAVASR DAGAPSTSHA  120
AVVVPPLPEP PAPPKQQQQA PRSTGEGVMN FSFFSRPLQR SLPQASTRTS AAGSKSVEST  180
LLQTNRLRST PLFSEQRTAW LQPPKESPAA VSASRPPAPP VPVRHAAEPA AALPQRLQPE  240
ARAAALPPRL QPEVRAAALP QRLQSEARAS EMPPPPATAT TSSVCSDNGE RSQLKRSSHQ  300
TLEWSVSQDD EDLDDEAGGL RRSAARSTKR GRTAEVHNMS ERRRRDRINE KMRALQELIP  360
NCNKIDKASM LEEAIEYLKT LQLQVQMMST MGTAGLCMPP MMAMQHMQMP PMAHFHHHHL  420
GAMGFGMGPF DPRLVAAAGA AQFPYPMMPG APIFGGHAMP PPPPFHQAAV AGAHMAPGPV  480
TNDAATAAQA EHEQTPGDHP QVPRTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3765940.0AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164967.10.0transcription factor APG-like
SwissprotQ6AT902e-80APG_ORYSJ; Transcription factor APG
TrEMBLA0A446JLU80.0A0A446JLU8_TRITD; Uncharacterized protein
STRINGTraes_1BS_D1FCBFBE8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]