PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_B8B4C1FB6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 297aa    MW: 32461.1 Da    PI: 12.3644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_B8B4C1FB6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.71.1e-28184284190
                            EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                            f+k+ tpsdv+k++rlv+pk++ae+h                   +++ l + d  g+ W+++++y+++s++yvltkGW++Fvk++gL
  Traes_1BL_B8B4C1FB6.1 184 FDKTVTPSDVGKLNRLVIPKQYAEKHfplqlpsasavvP---GecKGMLLNFDDAVGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 268
                            89***************************8877776652...144899**************************************** PP

                            -TT-EEEEEE-SSSEE CS
                     B3  75 kegDfvvFkldgrsef 90 
                             +gD v F+++ + + 
  Traes_1BL_B8B4C1FB6.1 269 HAGDAVGFYRSASGNN 284
                            *********7654444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-38178295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29181291IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-26183279No hitNo description
SMARTSM010194.5E-19184296IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366184294IPR003340B3 DNA binding domain
PfamPF023621.8E-25184287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
AAARPRARRP LRRRPGRRPS RCSASAVGPA RSWTRRSQAR RQTPAASAGC RRPSTRAWCR  60
SPTGGGVRRS TSATSASGWA RSRGRPRLRA PMTRRRSASA AAMPSPTSAR SPSPTPATPP  120
SSASSPPAPR PRSSTCCAST STPTSSRSTS APXXXXXXXX XXXXXXXXXX XXXXXAAARR  180
EYLFDKTVTP SDVGKLNRLV IPKQYAEKHF PLQLPSASAV VPGECKGMLL NFDDAVGKMW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKGLHA GDAVGFYRSA SGNNQLFIDC KIRSKST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-4918129611120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118RRRPGRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093100.0BT009310.1 Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287GHZ41e-102A0A287GHZ4_HORVV; Uncharacterized protein
STRINGTraes_1BL_B8B4C1FB6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-51related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]