PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_96F0745A2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 212aa    MW: 22962.4 Da    PI: 8.9746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_96F0745A2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-102974454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            h+  ErrRR+riN+ +++Lr+++P a       ++Ka+ L  +v+ +k+L
  Traes_1AS_96F0745A2.1 29 VHSLSERRRRERINTHLATLRRMIPDA-----NQMDKATLLACVVNQVKEL 74
                           5999**********************8.....4799999998888877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-131680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2532574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-122880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-82974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-103180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.0E-5111157No hitNo description
SuperFamilySSF550211.31E-5112173No hitNo description
CDDcd048732.17E-5116158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MATCQAPTSA PELSSSSGRS ATEARSLKVH SLSERRRRER INTHLATLRR MIPDANQMDK  60
ATLLACVVNQ VKELKRKATE TTRLQATAPI PPEANEITVH CYTAAGDNRT TYIRATVSCD  120
DRPGLFLGLA GAFRVLGLRV LRTETASLGG RASHLFVLCK EGGDVGAGLR AMEGAVRQAV  180
AEVAFPEMVC GGSSWSKRER ILEECCPVMY SV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685370.0AK368537.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2075J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566506.15e-83PREDICTED: transcription factor bHLH30-like
TrEMBLW4ZXE21e-155W4ZXE2_WHEAT; Uncharacterized protein
STRINGMLOC_69121.21e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-29bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]