PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_90F3120F8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 387aa    MW: 42935.1 Da    PI: 9.8162
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_90F3120F8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-1758107155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Traes_1AS_90F3120F8.1  58 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 107
                            78*******************......55************************997 PP

2AP240.85.5e-13150200155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Traes_1AS_90F3120F8.1 150 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 200
                            89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-958107IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1658116IPR016177DNA-binding domain
SMARTSM003803.3E-3259121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1759116IPR001471AP2/ERF domain
CDDcd000189.24E-1159117No hitNo description
PROSITE profilePS5103217.79459115IPR001471AP2/ERF domain
PfamPF008474.2E-8150200IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17150209IPR016177DNA-binding domain
CDDcd000182.14E-24150210No hitNo description
SMARTSM003801.9E-31151214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-16151208IPR001471AP2/ERF domain
PROSITE profilePS5103215.277151208IPR001471AP2/ERF domain
PRINTSPR003673.5E-6152163IPR001471AP2/ERF domain
PRINTSPR003673.5E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MPVPQHWAEL GFFRPAAPPP DMRILQLQQQ AHAPPPPPPA AQPPVAKKSR RGPRSRSSQY  60
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNLSDYE  120
DDMKQMKGLS KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL  180
FDNEVEAARA YDKAAIKCNG REAVTNFEPS TYDAELLNEV AAEGADVDLN LSISQPTSQS  240
PKRDKSSLGL QLHHGSYDGS ELKRPKVDAP PEMVAIPHRY PLLTEHPPIW HGQSYPLFLN  300
NEEAARDHSR RPEVATGAVP TWAWRVSHPP PTQPMPLFSS SSSAAASSGF SKTAAAAAPG  360
APSASFRFDP MAPSSSSSNQ HHHHHPR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4738230.0JX473823.2 Triticum aestivum cultivar Zhoumai 18 starch negative regulator RSR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170161.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC31e-157AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A3B5XUS00.0A0A3B5XUS0_WHEAT; Uncharacterized protein
TrEMBLA0A446IKQ70.0A0A446IKQ7_TRITD; Uncharacterized protein
STRINGTraes_1AS_90F3120F8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-101related to AP2.7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]