PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_02E068C7E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 262aa    MW: 29137.9 Da    PI: 6.4216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_02E068C7E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-111742413099
                            ..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3  30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            +++   +tl+   ++++W+ ++     ++ ++l+++W +Fv +n++++gD+++F  ++  ++ +++v+++r+
  Traes_1AS_02E068C7E.2 174 ENG--AVTLQMpGKSEKWRPRF--FIEKDNCMLAGNWLDFVCDNQVQVGDICIFVPEKGgERSTFTVHIIRA 241
                            333..45555534679******..66667799***********************9977699999***9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-16134242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16134241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-15141240No hitNo description
PROSITE profilePS508639.587142242IPR003340B3 DNA binding domain
PfamPF023622.0E-9170241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
ILSNDQVLSG QWELVEVHEQ KIDELVKETQ PEALGFAEAS IDHFRLGRTD IGSNQGTKKT  60
ASCERGSSSH CRNTAKAAVT PSSSEKSVED SAREYESSES DDHPTPPEAD YGVIFRSYLS  120
GTQMERVNML IHKIKPETIV FVATMRKCDV QLPTPLLIIS KERSLAAAAH FPHENGAVTL  180
QMPGKSEKWR PRFFIEKDNC MLAGNWLDFV CDNQVQVGDI CIFVPEKGGE RSTFTVHIIR  240
AEATHRRGVK RVRSSLDSPV GV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201512.11e-180uncharacterized protein LOC109787361
TrEMBLA0A3B5XV720.0A0A3B5XV72_WHEAT; Uncharacterized protein
TrEMBLA0A446IJA80.0A0A446IJA8_TRITD; Uncharacterized protein
STRINGTraes_1AS_02E068C7E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP492169
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]