PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_29F610E15.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 291aa    MW: 31406.7 Da    PI: 9.9128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_29F610E15.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.71.2e-2930126185
                            EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                            f+kv tpsdv+k++rlv+pk++ae++            +g+  +++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk++ L +
  Traes_1AL_29F610E15.1  30 FEKVVTPSDVGKLNRLVIPKQHAERYfpldgaaaalaaEGSGGKGMVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKSLGA 117
                            99****************************999999996666799******************************************* PP

                            T-EEEEEE- CS
                     B3  77 gDfvvFkld 85 
                            gD+v+F + 
  Traes_1AL_29F610E15.1 118 GDTVLFGRG 126
                            ******943 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-3921153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2927125IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-2728123No hitNo description
PfamPF023622.9E-2730142IPR003340B3 DNA binding domain
SMARTSM010196.6E-2230144IPR003340B3 DNA binding domain
PROSITE profilePS5086313.64830144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEFSPTAPAG GEESERVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG  60
AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKSLGAGDT  120
VLFGRGVGDG AARDRLYIDF RRRRPAESYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR  180
DFGTTYGVPP AASGSNRHVL FLRQQVPAAV VLKSVPVRAA ASVLEPPARP MPKRVRLFGV  240
NLDSPATEDD GTCGVTQTVT STLLQQLLPS PSSSTSSTAG KERQCSLDLG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-54231431113B3 domain-containing transcription factor NGA1
5os9_B4e-54231431113B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144FRRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741966e-78AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBankAP0149666e-78AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179425.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN82e-98Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A446IYE00.0A0A446IYE0_TRITD; Uncharacterized protein
STRINGTraes_1AL_29F610E15.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-46B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]