PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF201400030CFD_t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 261aa    MW: 28706.5 Da    PI: 4.5487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF201400030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-1171119355
                              HHHHHH.HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahner.ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++n++ Er RR+r+N+++  +r ++P+      +K++Ka+i + Av YI +Lq
  TRAES3BF201400030CFD_t1  71 ASKNIVeERDRRRRLNEKLYAIRGVVPNI-----TKMDKASIIQDAVAYIEELQ 119
                              5555552799******************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-1568134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.81869118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-1270123No hitNo description
PfamPF000108.6E-970119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1471133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1175124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEADMDASLD FLELEAHLVF DLGDADSKRW MSLADCCSSY LPAEDSLSGL DSCYNDSTGS  60
PSTASARATR ASKNIVEERD RRRRLNEKLY AIRGVVPNIT KMDKASIIQD AVAYIEELQE  120
QERRILAEVS DLEAGGCTAV VVNEGVEDAG VGFSPPKKTR RTASSSINDP VTSPATHPVL  180
LELEVMPIAE KLAVVSMRHD NAQHVMAKMY KALDPLRLKV ITSSVTFVDG RTVHTMFIEM  240
EETDSVETIK EMVQAALSHL E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-67HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBankHE9962563e-67HE996256.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_12674.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580572.11e-64PREDICTED: transcription factor bHLH35-like
TrEMBLA0A0C4BHR00.0A0A0C4BHR0_WHEAT; Uncharacterized protein
STRINGMLOC_43888.21e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-34bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]