PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF183400010CFD_t1
Common NameTRAES_3BF183400010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 305aa    MW: 32813.1 Da    PI: 5.0411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF183400010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08164188730
                              HHHHHHHHHHHHHHHHHHCTSCC.C CS
                      HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                              ++ErrRR+r+N++++ Lr+ +Pk +
  TRAES3BF183400010CFD_t1 164 MAERRRRKRLNDRLSMLRSTVPKiS 188
                              79********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.74E-6153188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-6164187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6164188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDPLDEESFL DELMPLQREE APALTYQGSN GMMTISDLLF YGGEACTAEE SSSVGFVWPF  60
QQPMPPSPPA ARPHPPNQEF NFNYLSEVCN PWRSYIPDPP AVVQAAAGKG PLTLPLHDAL  120
ASSSTFVFGG GDGESLGMRS MPAFGTHPES KLNAGSGTPS KNLMAERRRR KRLNDRLSML  180
RSTVPKISKI GATPEELNLL KNFSSGGNEE TPTRSSTKVC ANVENRGGGD TKIEIFCSTN  240
PGALIATVTA LDVLGLEIKQ CVVSCFSDFA MQASCSQAEG KRQVISTDEI KQALLRSVGY  300
GGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150230.11e-104transcription factor bHLH61-like
TrEMBLA0A077RPV40.0A0A077RPV4_WHEAT; Uncharacterized protein
TrEMBLA0A446PLX00.0A0A446PLX0_TRITD; Uncharacterized protein
STRINGTRIUR3_23651-P11e-180(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-38beta HLH protein 93
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]