PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF169000100CFD_t1
Common NameTRAES_3BF169000100CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 256aa    MW: 28395.8 Da    PI: 6.0876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF169000100CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-101812211055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +rRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  TRAES3BF169000100CFD_t1 181 KRRRERINEKLRVLQHLIPNG-----TKVDISTMLEEAVQYVKFLQ 221
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.684171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-14171235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13172234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.22E-11180225No hitNo description
PfamPF000109.0E-8181221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEAKCAAIWS SVDGRSEESE MIAHLQSMFW SNSDAAVNLC SPSTSANSCV AASTVHSNLF  60
LPLDMESHIT TPMVNTGMDL CFDHRHQTVT GHKRTSHMDE QIKRTSQKSR TVPSVRVSDA  120
LCLSLADNET NGDTVNQSSS SCCSSEEDSI AASEESFVPN QGDNSRGCRR PSKNLQSLYA  180
KRRRERINEK LRVLQHLIPN GTKVDISTML EEAVQYVKFL QLQIKVLSSD ETWMYAPLAY  240
NGMDISLSLR ITAAQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184287.11e-168transcription factor bHLH84-like
TrEMBLA0A077RZI70.0A0A077RZI7_WHEAT; Uncharacterized protein
STRINGTraes_3B_7D31B4B09.11e-179(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]