PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF118000010CFD_t1
Common NameTRAES_3BF118000010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 463aa    MW: 52643.7 Da    PI: 9.7749
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF118000010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-15351131397
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              ++++++pk++++  +g+   + ++ le+++  s+++k+   k+++++vlt+GW +Fv+  +L+ gD+++F+++g+s f   + +f
  TRAES3BF118000010CFD_t1  35 QQQMIIPKEYVRCLKGE--IPGEINLETRNRDSYTIKV--AKYQEKHVLTAGWPQFVENFHLQLGDSLLFRYNGDSLF--SIIIF 113
                              4679*******666666..5568***************..********************************998877..55555 PP

2B339.41.1e-123804571497
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                l++p ++ eeh g+  +  +++  ++  ++W+  +  + +++ y +++GW+ Fvk+n L+ gD+++++  ++++ ++ v+++
  TRAES3BF118000010CFD_t1 380 FSLTVPITYGEEHFGD--G--KVICFQLGEKKWNACF--SSSRNDYRIERGWSTFVKDNSLNIGDICLLEPLSNQGSTMEVHII 457
                              5689999999999655..2..577788999*******..999999*************************88888888999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1919115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2020115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.80123116IPR003340B3 DNA binding domain
CDDcd100179.49E-1524114No hitNo description
SMARTSM010198.7E-726116IPR003340B3 DNA binding domain
PfamPF023621.9E-1236113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-5150228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-14362458IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-14364458IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-11366457No hitNo description
SMARTSM010199.2E-5367460IPR003340B3 DNA binding domain
PROSITE profilePS5086310.574367460IPR003340B3 DNA binding domain
PfamPF023627.5E-11376457IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSPSCGRCTR RDVYNYRNSE DENKHFLMLM LGDFQQQMII PKEYVRCLKG EIPGEINLET  60
RNRDSYTIKV AKYQEKHVLT AGWPQFVENF HLQLGDSLLF RYNGDSLFSI IIFDKLGREE  120
ASFVLVDPFP PQVQGRHNEI GSSKRNLFSV SRERSQERLN LKQRINVNTK FKLSRTKKSS  180
LCLQRDGGAC VQKFSLEIRD RIILFRYNGN SRFSVIILDE LGREKASSVV NLLPPRALER  240
HTNGAETVSR HPSDGPVDCS HPLMLMPPPA QFHQQQQAIL MQPPLNHSSS SKSSAGQGDG  300
SFSSHDHVRN ALGFRRVVRR NPTSSQKQQE KDGYITTDKT KLTSAQEQRV KDMVQTIRSR  360
RSGITIFVAL IGKANVHPAF SLTVPITYGE EHFGDGKVIC FQLGEKKWNA CFSSSRNDYR  420
IERGWSTFVK DNSLNIGDIC LLEPLSNQGS TMEVHIIHVN NGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165134.11e-107putative B3 domain-containing protein Os03g0621600
TrEMBLA0A080YTZ00.0A0A080YTZ0_WHEAT; Uncharacterized protein
STRINGEMT281251e-163(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-10B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]