PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF114600210CFD_t1
Common NameTRAES_3BF114600210CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 700aa    MW: 73394.8 Da    PI: 7.087
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF114600210CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11262318155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  TRAES3BF114600210CFD_t1 262 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 318
                              57*******************4444.2455535555.779999**************98 PP

2AP246.78e-15361412155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRAES3BF114600210CFD_t1 361 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 412
                              57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-17262328No hitNo description
PfamPF008471.2E-8262318IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14262328IPR016177DNA-binding domain
SMARTSM003801.4E-21263332IPR001471AP2/ERF domain
PROSITE profilePS5103217.28263326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-11263327IPR001471AP2/ERF domain
PRINTSPR003674.6E-6264275IPR001471AP2/ERF domain
CDDcd000185.89E-23361420No hitNo description
SuperFamilySSF541711.57E-17361421IPR016177DNA-binding domain
PfamPF008479.9E-10361412IPR001471AP2/ERF domain
SMARTSM003802.4E-33362426IPR001471AP2/ERF domain
PROSITE profilePS5103219.045362420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-18362420IPR001471AP2/ERF domain
PRINTSPR003674.6E-6402422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MATVNNWLGF SLSPQELPPS AAASGDVSGA DVCYNIPQDW NMRGSELSAL VAEPKLEDFL  60
GGISYSDHHH HQHKQPGGNN MVVPAGSASG GAACYANSGG SSVGYLYHPS SASLQFADSV  120
MVASSGGGVH HDGAGIMANT TANGDLNGGG GGGIGLSMIK SWLRSQPSPA QAQPPEQQRA  180
EAAAQGLSLS MNMAACIPPL VGGERGVPEL AIVRKDDTAG GSSAGSGAVV SAGADSTGGS  240
SGAVVETPAS RKTADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD  300
KEEKAARAYD LAALKYWGAT TTTNFPVNNY EKELDEMKHM TRQEFVASLR RKSSGFSRGA  360
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  420
MTRYDVKSIL DSTALPIGSA AKRLKDKEAA TASSLALQQQ QHAGVVSGYD MGALAAYGAA  480
YHHHHPSVAG AVAWPTIAFQ TPPQQVSGGG GGHMYHPYAH AQPLRGWCKQ EPDHAVIAAA  540
HSLQELHHLN LGAGGGAHDF FSQHAQAMQQ QHGGLGSIDN GAGASLEHST GSNSVVYNNG  600
AVESYMLPMS TTTTAAVSHA HEQAAAHAHA RAVAAQAYSG GNMSRDHDDG KIAYENYLVS  660
TAEAYGGGRM AAWAPASAPP ATSSSDMTGT QLFSVWNDTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151353.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A077RX080.0A0A077RX08_WHEAT; Uncharacterized protein
TrEMBLA0A446Q7T40.0A0A446Q7T4_TRITD; Uncharacterized protein
STRINGEMT089900.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-117AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]