PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF099200070CFD_t1
Common NameTRAES_3BF099200070CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 382aa    MW: 42293.5 Da    PI: 8.4676
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF099200070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44e-0964120155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s ykGV++++ +gr++A+++d  +    + +r   g + t+eeAa+ ++ a++k +g
  TRAES3BF099200070CFD_t1  64 SIYKGVTRHSISGRYEAHLWDrHCRSTaQGRRGKQGCYKTEEEAARTHDLAALKCWG 120
                              57*******************7766335445555599***************99876 PP

2AP249.88.7e-16164215155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++ +grW+A+I +       +++ +lg f+t eeAa+a++ a+ +++g
  TRAES3BF099200070CFD_t1 164 SKYRGVTRHHANGRWEARIGHaA----GTQYSYLGIFDTQEEAARAYDLAAIRIRG 215
                              89****************99933....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-664120IPR001471AP2/ERF domain
CDDcd000187.19E-1564131No hitNo description
SuperFamilySSF541711.18E-1064130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-965129IPR001471AP2/ERF domain
SMARTSM003806.3E-1565135IPR001471AP2/ERF domain
PROSITE profilePS5103215.34365129IPR001471AP2/ERF domain
CDDcd000182.07E-21164225No hitNo description
PfamPF008473.1E-11164215IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17164224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-18165223IPR001471AP2/ERF domain
SMARTSM003803.8E-25165229IPR001471AP2/ERF domain
PROSITE profilePS5103217.846165223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVTMTTTKKQ PCRGAAPLSP ASSSSASSWP WGSRIAPSSA RTLGRKKKKR GRSDAVVVPS  60
RRSSIYKGVT RHSISGRYEA HLWDRHCRST AQGRRGKQGC YKTEEEAART HDLAALKCWG  120
SDCGLLNFPV DTYRQERERM QRMTREEYLA RLRRNSSGFT RGVSKYRGVT RHHANGRWEA  180
RIGHAAGTQY SYLGIFDTQE EAARAYDLAA IRIRGPGAVT NFDADCYVDI PQPLPCKAEP  240
DMEPAAARPC PLPPAPLPLL PPKVEPKDEP EDDFEFEREP PPAPALRDDA DRVDRAIAEV  300
LQALCVDRAD FEARYPPRRA RVAAPGAGWP TPLDSDELPD LPVPGDVGFF EDDIESVLFA  360
APGDAEVPRA ATISSLSSGR WW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195177.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A077S1020.0A0A077S102_WHEAT; Uncharacterized protein
STRINGBRADI2G53070.11e-118(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-56AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]