PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF098300010CFD_t1
Common NameTRAES_3BF098300010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 350aa    MW: 38321.4 Da    PI: 10.2104
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF098300010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-1155103155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s++kGV   + +grW A+I++      r +r++lg+f   + Aa+a++ a ++++g
  TRAES3BF098300010CFD_t1  55 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDQDSAARAYDVASLRYRG 103
                              689***9788.8*********......44*************************98 PP

2B392.72.6e-29169262185
                              EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                              f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +g
  TRAES3BF098300010CFD_t1 169 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetPTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAG 254
                              89*************************9988776644445999******************************************* PP

                              -EEEEEE- CS
                       B3  78 DfvvFkld 85 
                              D+++F+ +
  TRAES3BF098300010CFD_t1 255 DSILFSCS 262
                              *****943 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-1555112IPR016177DNA-binding domain
PfamPF008478.0E-755103IPR001471AP2/ERF domain
CDDcd000181.89E-2055111No hitNo description
Gene3DG3DSA:3.30.730.105.9E-1856111IPR001471AP2/ERF domain
SMARTSM003803.6E-1956117IPR001471AP2/ERF domain
PROSITE profilePS5103220.19256111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.5E-37164281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-29166275IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-28167259No hitNo description
PfamPF023623.9E-27169264IPR003340B3 DNA binding domain
PROSITE profilePS5086313.676169278IPR003340B3 DNA binding domain
SMARTSM010194.8E-22169277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGVEILSSMV EHSFQYSSGV STATTESGTA GTPPRPLSLP VAIADESVTS RSASSRFKGV  60
VPQPNGRWGA QIYERHARVW LGTFPDQDSA ARAYDVASLR YRGRDVAFNF PCAAVEGELA  120
FLAAHSKAEI VDMLRKQTYA DELRQGLRRG RGMGARAQPT PSWAREPLFE KAVTPSDVGK  180
LNRLVVPKQH AEKHFPLKRT PETPTTTGKG VLLNFEDGEG KVWRFRYSYW NSSQSYVLTK  240
GWSRFVREKG LGAGDSILFS CSLYEQEKQF FIDCKKNTSM NGGKSASPLP VGVTTKGEQV  300
RVVRLFGVDI SGVKRGRAAT ATAEQGLQEL FKRQCVAPGQ HSPALGAFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-4616627511115DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565321.11e-150PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-135Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLW5CWS40.0W5CWS4_WHEAT; Uncharacterized protein
STRINGMLOC_56567.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-99related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]