PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF076600020CFD_t1
Common NameTRAES_3BF076600020CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 447aa    MW: 48076.7 Da    PI: 6.4584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF076600020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12247291554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  TRAES3BF076600020CFD_t1 247 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 291
                              8899********************95.....4999************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15243313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-12244295No hitNo description
Gene3DG3DSA:4.10.280.105.9E-16246311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-10247291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDSSSWIHGY GANDGAAAGN SGFMCGYAAS CVVPEGLQSS TEEQRTQIQH HLNQASIQHV  60
QISMQMNMED EPAAYIVAAG DGAAVGMQQS VLDEFDFLPS HHAGGCSFPS SSSTSSSFRS  120
ASLSCSPENS SAHALTMPAA GLQFPEVSSH VPPLVLPCDD DYHQYVLNFH DTAAMEPGVV  180
PASAFSRYAR HLGARRRPKP ACGQKMFKKS MSVLVKMQTA MRYSHQQHHF QQASAETELS  240
SVNQLQHMIS ERKRREKLND SFQALKTVLP PGSKKDKTSI LITAREYVNS LKSKVCDLEE  300
KNKALQAQLA ECARAAGRVE EDDAEKVEIQ ITRGAADRED GTTTSEVCTV KIAARPAHGN  360
TMDVVLRTLQ CLNDQMGEGD VSLVAMSTSD GDGGNGLTGA FLTMQLKSAS GAKWEEEVVR  420
EAVAKAVAAR TGADRRGDAA GRSRHAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255ERKRRE
2251256RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679260.0AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A077RF560.0A0A077RF56_WHEAT; Uncharacterized protein
STRINGEMT030370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-25bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]