PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF075700010CFD_t1
Common NameTRAES_3BF075700010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 417aa    MW: 44801.2 Da    PI: 6.6237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF075700010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12217261554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  TRAES3BF075700010CFD_t1 217 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 261
                              8899********************95.....4999************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15213283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-13214265No hitNo description
Gene3DG3DSA:4.10.280.105.1E-16216281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-10217261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDSSSWIHGY GANDGAAAGN SGFMCGYAAR YISMQMNMED EPAAYIVAAG DGAAVGMQQS  60
VLDEFDFLPS HHAGGCSFPS SSSTSSSFRS ASLSCSPENS SAHALTMPAA GLQFPEVSSH  120
VPPLVLPCDD DYHQYVLNFH DTAAMEPGVV PASAFSRYAR HLGARRRPKP ACGQKMFKKS  180
MSVLVKMQTA MRYSHQQHHF QQASAETELS SVNQLQHMIS ERKRREKLND SFQALKTVLP  240
PGSKKDKTSI LITAREYVNS LKSKVCDLEE KNKALQAQLA ECARAAGRVE EDDAEKVEIQ  300
ITRGAADRED GTTTSEVCTV KIAARPAHGN TMDVVLRTLQ CLNDQMGEGD VSLVAMSTSD  360
GDGGNGLTGA FLTMQLKSAS GAKWEEEVVR EAVAKAVAAR TGADRRGDAA GRSRHAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225ERKRRE
2221226RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679260.0AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A077RV460.0A0A077RV46_WHEAT; Uncharacterized protein
TrEMBLA0A446PI370.0A0A446PI37_TRITD; Uncharacterized protein
STRINGEMT030370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-25bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]