PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF075600050CFD_t1
Common NameTRAES_3BF075600050CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 243aa    MW: 24751.7 Da    PI: 9.5465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF075600050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-193383256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++ a+++++g+
  TRAES3BF075600050CFD_t1 33 HYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDTAAREFRGA 83
                             6********.**********83...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-393396IPR001471AP2/ERF domain
CDDcd000187.14E-283388No hitNo description
SuperFamilySSF541711.7E-223391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-323390IPR001471AP2/ERF domain
PROSITE profilePS5103224.3293390IPR001471AP2/ERF domain
PfamPF008475.0E-133382IPR001471AP2/ERF domain
PRINTSPR003673.4E-113445IPR001471AP2/ERF domain
PRINTSPR003673.4E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPRAAEKAP VSPPTRLGLG VGGGVGVVAG GAHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDTAAREF RGAKAKTNFP FPSSSSSSPV AGGGSPSSNS TLDSSGGGSG  120
GCAQAPMQAI PLPPALDLDL FHRAAAVTAV AGGGMRFPFN GYPVASRQPL HPYFFYEQAA  180
AAAAAASGYR ALKVAQPVTV AAVAQSDSDS SSVVDLSPSP PAVTAHKAVT FDLDLNGPPP  240
SED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-232995168ATERF1
3gcc_A5e-232995168ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564396.11e-111PREDICTED: ethylene-responsive transcription factor 8
TrEMBLA0A077S4G31e-172A0A077S4G3_WHEAT; Uncharacterized protein
STRINGMLOC_24530.11e-115(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-19erf domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]