PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF060500360CFD_t1
Common NameTRAES_3BF060500360CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 521aa    MW: 56314 Da    PI: 5.1573
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF060500360CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.89.2e-11175261597
                   DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                              r w+ eDe+ +L +l+   + +g++      +++  v +s++ k  +k+++ eK+r+++++++k v++   g     +k++d   f
  TRAES3BF060500360CFD_t1 175 RRWTVEDELKILEALVRHVKANGTQ--PGAGELIAVVGGSLERKnCTKTEMYEKVRNIRQRYEKAVST---G--ALPEKDDDLRKF 253
                              78****************9999976..57899*********875389*******************99...3..44567889999* PP

                   DUF573  90 elskkiWg 97 
                              +ls+++Wg
  TRAES3BF060500360CFD_t1 254 KLSEQVWG 261
                              *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-15174261IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGRKRRQPSP PPPPPPEEDS SAEESSSAEE EEEEEEEAAE ATPATQNSPK PPSAAADDDA  60
EADADSSDGS DEESSESGKI DAEAFELRQI ASSNPPPAAA SKPESDDQEP TPPGKDKKKR  120
KAGAEKVAPE PSPSGKAKKK ALSELTPSSE GKKKHKAQPE KTAPWNKLEK PGQPRRWTVE  180
DELKILEALV RHVKANGTQP GAGELIAVVG GSLERKNCTK TEMYEKVRNI RQRYEKAVST  240
GALPEKDDDL RKFKLSEQVW GANAKQVAAA TMAQNEAASL KSKKKGQTSK EKTEGHSKGG  300
AAKEATASAD ETEGYSKGAT AKQATEEKVE EDGKGRSSKK ASTADTPAKS RKRGNHNEEL  360
EGDAKTATTK ETVDTTTQNG GTLVRSKSGK SDKEKADGDA ESPTPTEDMA DAQNGGTLAL  420
YKTEGEAHEE KMDTDANVKG TRKGFEELQK LYPNLTSYVE DIQAQHPCGE TLKRAFEFIP  480
DEKACTLESK IKKQRVAELR MEMRRSDTKK EVTNIFIGLL D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571636.11e-122PREDICTED: hepatoma-derived growth factor-related protein 2-like
TrEMBLA0A077RT140.0A0A077RT14_WHEAT; Uncharacterized protein
STRINGMLOC_12824.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]