PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF054400190CFD_t1
Common NameTRAES_3BF054400190CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 235aa    MW: 28032.6 Da    PI: 10.6856
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF054400190CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.2e-22351151298
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               + r+v+p +f++++ g+  +++t++l +++g +++v++  +k+ ++ vl +GWk F++a++L++gDf+vFk+dg+s+   +v +f
  TRAES3BF054400190CFD_t1  35 FHERMVIPDRFVQHFRGQ--TGRTIKLASRHGYTFDVQI--TKNLEKLVLDSGWKAFARAHNLRTGDFLVFKYDGHSQL--KVLIF 114
                              4568********888888..4569***************..********************************997777..88777 PP

                              - CS
                       B3  98 r 98 
                               
  TRAES3BF054400190CFD_t1 115 G 115
                              5 PP

2B3543.1e-1715123117100
                              E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                       B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                               +++k+ae +       e+++ltl+  +g++Wev+++++k++ + +l+ GWk+F+++n+L+ gD+++F+l ++ ++  ++v+++rk
  TRAES3BF054400190CFD_t1 151 EISRKYAEVYlpF----EEQMLTLQ-HHGKKWEVRCRVKKSKAKRLLR-GWKHFARDNNLQLGDVCLFELLRNkKKYVMNVHIIRK 230
                              5778888777431....23356655.5*********988887776666.*********************9998999999999998 PP

                              S CS
                       B3 100 s 100
                              s
  TRAES3BF054400190CFD_t1 231 S 231
                              5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2422119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2423119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.97224117IPR003340B3 DNA binding domain
CDDcd100178.94E-2225114No hitNo description
SMARTSM010191.0E-1327117IPR003340B3 DNA binding domain
PfamPF023629.6E-2027114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211135231IPR003340B3 DNA binding domain
SMARTSM010193.8E-10138231IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-20142231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-21148231IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-15151230IPR003340B3 DNA binding domain
CDDcd100171.04E-16152229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSKPWKKRKE LDEHRYWNHT GEQDKHFFKV MIGDFHERMV IPDRFVQHFR GQTGRTIKLA  60
SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HNLRTGDFLV FKYDGHSQLK VLIFGPSGCE  120
KIQACNLKKN AAPGKDWLAT PVNSYRYAFH EISRKYAEVY LPFEEQMLTL QHHGKKWEVR  180
CRVKKSKAKR LLRGWKHFAR DNNLQLGDVC LFELLRNKKK YVMNVHIIRK SLYKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-164HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162977.13e-89putative B3 domain-containing protein Os03g0621600
SwissprotQ851V52e-43Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A077S7T81e-175A0A077S7T8_WHEAT; Uncharacterized protein
TrEMBLA0A446QD501e-175A0A446QD50_TRITD; Uncharacterized protein
STRINGEMT283802e-91(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-22B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]