PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF036800040CFD_t1
Common NameTRAES_3BF036800040CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 451aa    MW: 48093.3 Da    PI: 7.8388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF036800040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12301346454
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI +L
  TRAES3BF036800040CFD_t1 301 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIPEL 346
                              799***********************66......***************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-3940215IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.526297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-14300350No hitNo description
Gene3DG3DSA:4.10.280.101.7E-15300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-16300352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10301347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-15303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSWSDTDAAL FAAVLGHDAA RHLATTPPHL DGPASSSPEL QARLYDLVER GGAWTYGIYW  60
QESRAGAGVL GWGDGHCRDG PAEQAGATDR SLARKRALLR LHALYGGGDE DGADYALRLD  120
RVTGVEMYFL ASMYFSFRED AGGPGRALTS GHHAWAAVDP HLPGSPGWYV RASLAQSAGL  180
RTVVFLPCKG GVLELGSAVA MRENPEVLRA IQSAFHVESA SPDDHMRIFG KDVSRGSPMP  240
PLGAAAKQEV AAVVKPKPQQ EPPKTISFSN AVDAQKQAGG EERRPRKRGR KPANGREEPL  300
NHVEAERQRR EKLNQRFYAL RAVVPKISKM DKASLLSDAI AYIPELEERL RGGAAGPAPA  360
RAEAGPSVEV KAMQDEVVLR VSTPLDAHPI SGALSAMRDS QLSVVASSMA VADDTVTHTL  420
VVRSAGADRL TAETVLAAIS RGVMMSATPS P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A7e-19332182195Transcription factor MYC3
4rs9_A7e-19332182195Transcription factor MYC3
4rqw_B7e-19332182195Transcription factor MYC3
4rqw_A7e-19332182195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282290RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.10.0PREDICTED: transcription factor bHLH13
TrEMBLA0A077S1T20.0A0A077S1T2_WHEAT; Uncharacterized protein
STRINGMLOC_70409.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-58bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]