PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035300060CFD_t1
Common NameTRAES_3BF035300060CFD_c1, TRAES_3BF035700020CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 214aa    MW: 23639 Da    PI: 10.1419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035300060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-083281554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             ++  E+ RR+r++   ++L +l+Pk + ++++  ++    L  A  YIk+L
  TRAES3BF035300060CFD_t1 32 KKDSEKERRQRMKALCDKLASLIPKeD-NPHADTVTQLGSLDVAASYIKKL 81
                             5678*********************66.5555669999***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0482781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-43285No hitNo description
Gene3DG3DSA:4.10.280.101.4E-113297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-53281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-93396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-43387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEVKAKPARG GKRTRASVGT AGTPTEKLLM EKKDSEKERR QRMKALCDKL ASLIPKEDNP  60
HADTVTQLGS LDVAASYIKK LKERVDELQR KKASMQAMAT SRGVNDIRTP TTTTNTSSGA  120
GSLEGEKYLE ASPTVVEVRQ SDESSMEVRL ICSTKRPIKL HEVITIHEEE GADIVNANHS  180
VAGHKIFYTI HSRAFSTRIG IDVSRINERL RALV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17991KLKERVDELQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565225.13e-71PREDICTED: uncharacterized protein LOC100830809
TrEMBLA0A077RNT51e-156A0A077RNT5_WHEAT; Uncharacterized protein
STRINGMLOC_17549.11e-118(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.14e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]