PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF032700040CFD_t1
Common NameTRAES_3BF032700040CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 95aa    MW: 10717.5 Da    PI: 8.7443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF032700040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-104732197
                             HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                             +f+++   +   +++  +++  g sW+v++  +   gr++l +GW  ++  +++k g +v+Fkl      +l+v +f
  TRAES3BF032700040CFD_t1  4 DFTKNLVAV---PTEFNMRNNIGCSWRVTV--KLMNGRVTLDRGWATYAAVHQIKIGYMVTFKLLT--PDTLKVIIF 73
                             565444444...45799*************..777778*************************865..344566665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.505176IPR003340B3 DNA binding domain
PfamPF023626.3E-8273IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-11776IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-111176IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MPLDFTKNLV AVPTEFNMRN NIGCSWRVTV KLMNGRVTLD RGWATYAAVH QIKIGYMVTF  60
KLLTPDTLKV IIFNDDGIEV VNKCGKHDEA FAAKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-160HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146207.13e-57putative B3 domain-containing protein Os03g0621600
TrEMBLA0A077S4Z01e-64A0A077S4Z0_WHEAT; Uncharacterized protein
TrEMBLA0A446Q4651e-64A0A446Q465_TRITD; Uncharacterized protein
STRINGEMT067229e-56(Aegilops tauschii)
STRINGTRIUR3_20025-P12e-56(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1723937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.12e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]