PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF030500010CFD_t1
Common NameTRAES_3BF030500010CFD_c1, TRAES_3BF030600030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 212aa    MW: 22883.6 Da    PI: 6.3823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF030500010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-1063103954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  TRAES3BF030500010CFD_t1  63 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 103
                              699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.31354103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1459118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1260113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1360109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.72E-1460108No hitNo description
PfamPF000102.5E-763103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDPYHYENIH DPHGYSFPVH SQPPLLLHHY PAAALAESRV SRGGAGRRRP GAKLSTDPQS  60
VAARERRHRI SDRFRVLRSL VPGGSKMDTV SMLEQAIHYV KFLKAQVSLY QAALVQHEEG  120
CGGVGHGEFA GGAGEVTAME LPAAQALQEV MSCYYAGAHQ VEELDLCAGQ MSSSSHDLPP  180
LPSCVFDEES AAACYSGCSL QAEEIAHAHG SY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567247.17e-80PREDICTED: transcription factor LAX PANICLE-like
SwissprotQ7XAQ64e-56LAX_ORYSJ; Transcription factor LAX PANICLE
TrEMBLW5D4L21e-154W5D4L2_WHEAT; Uncharacterized protein
STRINGMLOC_54157.11e-114(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.19e-26APRATAXIN-like
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]