PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF002300110CFD_t1
Common NameTRAES_3BF002300110CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 123aa    MW: 13981.9 Da    PI: 10.1104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF002300110CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-14241111195
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                       B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                              ++   l +p +f ++hg  +++   ++    +g++W+v l++  r  +++     + l+ GW++F  +ngL +gD++ F+l+++  
  TRAES3BF002300110CFD_t1  24 TSWEKLNVPVEFSQSHGFTEKGR--VV-LRMRGQQWSVCLKHsnR--RKGnartrTALRYGWNRFRVDNGLHVGDICFFQLVHDaG 104
                              4445699*********8876553..44.45599*****9988652..333346779*************************99877 PP

                              EE..EEE CS
                       B3  89 efelvvk 95 
                              +  +v++
  TRAES3BF002300110CFD_t1 105 GDDPVLS 111
                              7777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.80214118IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1516103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2016118IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-516118IPR003340B3 DNA binding domain
PfamPF023622.0E-1220111IPR003340B3 DNA binding domain
CDDcd100173.88E-1228116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAQQLRDSPD LAGFEFYKLM ASGTSWEKLN VPVEFSQSHG FTEKGRVVLR MRGQQWSVCL  60
KHSNRRKGNA RTRTALRYGW NRFRVDNGLH VGDICFFQLV HDAGGDDPVL SVEVRKADGT  120
IVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-159HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172157.14e-60B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q263e-29Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A077S1M24e-87A0A077S1M2_WHEAT; Uncharacterized protein
TrEMBLA0A446Q8W44e-87A0A446Q8W4_TRITD; Uncharacterized protein
STRINGEMT235663e-60(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]