PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G241000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 370aa    MW: 37970.2 Da    PI: 6.1263
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.71.7e-37651736114
                 TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa. 95 
                          r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ +    ++ss+++++s+  
  Sevir.6G241000.1.p  65 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSSSSPSSLa 154
                         6999********************************************************77777333.3333333333333322222221 PP

                 TCP  96 kskksqksaasalnlakes 114
                             +++sa++ + + + +
  Sevir.6G241000.1.p 155 MVDGEESSANKRRRKLQPT 173
                         2222222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38167121IPR017887Transcription factor TCP subgroup
PfamPF036346.0E-3167164IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEAQAQDRAE EGEAARQQHV VGAATAAAAA GMAMGAIPMH GFMVPKPEPV EYFGGMAVVR  60
GKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL LQQSEPAIIA  120
ATGTGTVPAI ATTVDGVLRI PTQSSSSSSP SSLAMVDGEE SSANKRRRKL QPTRAAAGAS  180
PLATAAPAAY YPVIADPLLQ GTGGAAAISV PSGLAPITAS GAPQGLVPVF AVPAAGSPGG  240
GGGAGSRMIP QATAVWMVPQ PGATAGGAAT QPTQFWAIQS APQLINIGGA QTAAVFPTAV  300
NVADFQQQQV SSMSHNSNSE QQHQLHLQHP GSGSHDQHRG GSGRNNVDHP EEDEDDDDEE  360
PVSDSSPEE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G241000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458660.0EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974085.10.0transcription factor PCF2
SwissprotA2YXQ11e-156PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-156PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2S3I4I01e-180A0A2S3I4I0_9POAL; Uncharacterized protein
STRINGPavir.Fa00111.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-42TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]