PlantTFDB
Plant Transcription Factor Database
v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G170600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 415aa    MW: 45195.9 Da    PI: 6.4101
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G170600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-1444102255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV++++++gr++A+++d  + +g    k+ k+++lg ++ ++ Aa+a++ a++k++g
  Sevir.6G170600.1.p  44 AYRGVTRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 102
                         69******************4.55555887557**********99*************98 PP
2AP247.35e-15145196155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Sevir.6G170600.1.p 145 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 196
                         89****99**********988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1543111IPR016177DNA-binding domain
PROSITE profilePS5103219.50644110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1444110IPR001471AP2/ERF domain
PfamPF008472.0E-1144102IPR001471AP2/ERF domain
SMARTSM003802.4E-2244116IPR001471AP2/ERF domain
PRINTSPR003675.8E-54556IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17145205IPR016177DNA-binding domain
CDDcd000182.31E-21145205No hitNo description
PfamPF008471.0E-9145195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17146204IPR001471AP2/ERF domain
PROSITE profilePS5103217.741146204IPR001471AP2/ERF domain
SMARTSM003801.1E-25146210IPR001471AP2/ERF domain
PRINTSPR003675.8E-5186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAKPRARRNA APDEDPNAAT GVRVTKRARR KSGPRESPSQ RSSAYRGVTR HRWTGRFEAH  60
LWDKDARGGS RGKKGKQVYL GAYDDEDAAA RAHDLAALKY WGPGTVLNFP LCGYDEELKE  120
MEGQPREEYI GSLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ  180
EEAAVAYDIA AIEHRGLNAV TNFDIGHYVN HWHRHRRGAG GGDSLGAMDA ATPVVVPFQL  240
PDDLPERPAA TGLNGTMGAA DLHDGEDQMP HHACSFLGDG AQLADQVGPP AHHAAPTPSA  300
LDLLLQSPKF KEMMEQVSEA AAMADGNSSS SAAETSWASS SSSSPPQPLS PQRQPEISGG  360
STPARCSFPD DVQTFFDFEN ETDMGFTYAE VDTFLFGDLG EYAAPMFQYC ELDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698471e-180BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
GenBankKJ7282111e-180KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3YHX30.0K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.26e-76AP2 family protein