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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G170600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 415aa MW: 45195.9 Da PI: 6.4101 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 44 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d + +g k+ k+++lg ++ ++ Aa+a++ a++k++g Sevir.6G170600.1.p 44 AYRGVTRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 102 69******************4.55555887557**********99*************98 PP | |||||||
2 | AP2 | 47.3 | 5e-15 | 145 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ + +g Sevir.6G170600.1.p 145 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 196 89****99**********988422...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-15 | 43 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.506 | 44 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-14 | 44 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 44 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-22 | 44 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-5 | 45 | 56 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 145 | 205 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.31E-21 | 145 | 205 | No hit | No description |
Pfam | PF00847 | 1.0E-9 | 145 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-17 | 146 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.741 | 146 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-25 | 146 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-5 | 186 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MAKPRARRNA APDEDPNAAT GVRVTKRARR KSGPRESPSQ RSSAYRGVTR HRWTGRFEAH 60 LWDKDARGGS RGKKGKQVYL GAYDDEDAAA RAHDLAALKY WGPGTVLNFP LCGYDEELKE 120 MEGQPREEYI GSLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ 180 EEAAVAYDIA AIEHRGLNAV TNFDIGHYVN HWHRHRRGAG GGDSLGAMDA ATPVVVPFQL 240 PDDLPERPAA TGLNGTMGAA DLHDGEDQMP HHACSFLGDG AQLADQVGPP AHHAAPTPSA 300 LDLLLQSPKF KEMMEQVSEA AAMADGNSSS SAAETSWASS SSSSPPQPLS PQRQPEISGG 360 STPARCSFPD DVQTFFDFEN ETDMGFTYAE VDTFLFGDLG EYAAPMFQYC ELDV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069847 | 1e-180 | BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds. | |||
GenBank | KJ728211 | 1e-180 | KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973570.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | K3YHX3 | 0.0 | K3YHX3_SETIT; Uncharacterized protein | ||||
STRING | Si013842m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 6e-76 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G170600.1.p |