PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G043500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 173aa    MW: 18254.2 Da    PI: 6.5099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G043500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-163786255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  + ++ g
  Sevir.6G043500.1.p 37 EYLGVRRRP-WGRYAAEIRNPVT---KERHWLGTFDTAEEAAVAYDLSAISISG 86
                        588******.**********654...5*******************99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-183695IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-253794IPR001471AP2/ERF domain
PROSITE profilePS5103220.5213795IPR001471AP2/ERF domain
SMARTSM003809.2E-2537101IPR001471AP2/ERF domain
PfamPF008474.2E-93884IPR001471AP2/ERF domain
PRINTSPR003677.3E-93849IPR001471AP2/ERF domain
CDDcd000185.54E-203878No hitNo description
PRINTSPR003677.3E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSDAPAPVAH QVAVAAMGDH DLQPPQQRRR RSRASSEYLG VRRRPWGRYA AEIRNPVTKE  60
RHWLGTFDTA EEAAVAYDLS AISISGAAAA RTNFYYPCGA GLELGAAGAA TTLQQQQPSP  120
YGQVPIAPPP SPLSDGSGSG STVEDYECQL SAGESFRHQN APSAPSASLY LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16371021481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G043500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417622e-82AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051642e-82AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149642e-82AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-82CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683340.17e-93ethylene-responsive transcription factor LEP
SwissprotQ3E7034e-30ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLK3YLW11e-103K3YLW1_SETIT; Uncharacterized protein
STRINGSi015237m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-24ERF family protein