PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G314500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 396aa    MW: 44358.6 Da    PI: 4.9722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G314500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.25.7e-31461851128
                 NAM   1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                         lp+G++F+P+d+el+++ L+k  kv  k++++ +  i+++d    +++++P++Lp  vk++ +  +fF+++ k+y+tg++k+r+++     
  Sevir.1G314500.1.p  46 LPKGVKFDPSDQELLWHLLAKigKVGVKPHPFIDEfIPTIDsnegLCYIHPQKLP-GVKQDGSVSHFFHRTFKAYSTGTKKRRKINtdelv 135
                         799************888876334566665543322665554455**********.677888899******************75545666 PP

                 NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+k+v+  +g++ g+kk++v y  + +  k ekt+Wvmh+y++
  Sevir.1G314500.1.p 136 EVRWNKTGKTKPVVI-GGTHLGCKKIMVMYasNIKGGKQEKTNWVMHQYHV 185
                         899************.999***********5433666777*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3331204IPR003441NAC domain
PROSITE profilePS5100529.12146204IPR003441NAC domain
PfamPF023651.9E-1347185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASKIKNASG PTQHTTYTWN SNPTKECPKC NHIIDNSDIV DECPGLPKGV KFDPSDQELL  60
WHLLAKIGKV GVKPHPFIDE FIPTIDSNEG LCYIHPQKLP GVKQDGSVSH FFHRTFKAYS  120
TGTKKRRKIN TDELVEVRWN KTGKTKPVVI GGTHLGCKKI MVMYASNIKG GKQEKTNWVM  180
HQYHVGTGED EKDGEFVVSK LFYQQQPKAV EKNSEGMGEL LEPVYAAVDL AACPPLMDWS  240
ALPFEEGNSN QETVQKSEHN SDQTNSHCEV KDKEDTNHPA SEKVEDQDSH PSEDPKWWEG  300
ESQFLMNSQQ LAECMSICDE FLQSQNSSGS GDEPGKSRPC LAEYAQLPAD DLKKDIEECQ  360
KLADSDNTNM EPECTPEFRL SQLDCFATTW FEGKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955196.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-126NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK3YYT80.0K3YYT8_SETIT; Uncharacterized protein
STRINGSi019444m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-127NAC family protein