PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065338
Common NameLOC107063494
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 247aa    MW: 28707.9 Da    PI: 9.7721
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065338genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34311222102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F++k+y+++ed++ +++i ws++g+sfv++d+++f+ +vLpkyFkh+n++SFv QLn YgFkk+  ++         we+ h +F++gk
  PGSC0003DMP400065338  31 FVTKTYDMVEDPNSNSIICWSSSGTSFVIWDHNRFSFEVLPKYFKHTNMSSFVYQLNNYGFKKIGLQK---------WEYGHYWFQAGK 110
                           9***************************************************************9998.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++ikr+ +
  PGSC0003DMP400065338 111 KHLLCNIKRRMK 122
                           *********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3527120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-4827120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3228120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-173154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-178294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAMNNMNQFS SGEIGHGIGD GAKREPGIAP FVTKTYDMVE DPNSNSIICW SSSGTSFVIW  60
DHNRFSFEVL PKYFKHTNMS SFVYQLNNYG FKKIGLQKWE YGHYWFQAGK KHLLCNIKRR  120
MKNLNAHRDF NQETYFYGVE EEMRSQRDLN ITLKSEFEKL KERQDDMVKG IASLKEYLEK  180
SEAESRKFLC FLAKAVKQVV ATKRDVEVRD VIMSKRRAED VMGSSKSSEK KKMIDFSAIK  240
RVHDIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-281812116130Heat shock factor protein 1
5d5v_B4e-281812116130Heat shock factor protein 1
5d5v_D4e-281812116130Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2124341e-157AC212434.2 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence.
GenBankHG9755231e-157HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170900.10.0PREDICTED: heat stress transcription factor A-6b-like
TrEMBLM1DSF90.0M1DSF9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000936630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13740910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-43heat shock transcription factor A2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]