PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055612
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 133aa    MW: 14570.7 Da    PI: 7.1866
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055612genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.21.4e-5427120194
                 NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                           vreqdr+lPian++rimkk lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+w+l+tlGfedy+eplk+yl +
  PGSC0003DMP400055612  27 VREQDRYLPIANIGRIMKKGLPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLVWSLTTLGFEDYIEPLKAYLIR 115
                           69*************************************************************************************** PP

                 NF-YB  90 yrele 94 
                           yre+ 
  PGSC0003DMP400055612 116 YREVI 120
                           ***85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-5023119IPR009072Histone-fold
SuperFamilySSF471131.71E-3730120IPR009072Histone-fold
PfamPF008081.1E-263396IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.0E-196179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.0E-198098No hitNo description
PRINTSPR006151.0E-1999117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAEVPASPGG GCGSHESGGE RSPQSNVREQ DRYLPIANIG RIMKKGLPAN AKIAKEAKDT  60
VQECVSEFIS FITSEASDKC QKEKRKTING DDLVWSLTTL GFEDYIEPLK AYLIRYREVI  120
AVPPQLLMIS KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4627118192Transcription factor HapC (Eurofung)
4g92_B6e-4627118192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-105HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359336.15e-84PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_015074252.15e-84nuclear transcription factor Y subunit B-10-like
RefseqXP_015169862.15e-84PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_027772469.15e-84nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK42e-66NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLM1D6014e-93M1D601_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000824657e-94(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.35e-58nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]