PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054664
Common NameLOC102602483
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 375aa    MW: 43011.1 Da    PI: 4.64
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054664genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.3e-15142226286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W+++e+  L++a   +  r +r++l+   W+ev++++ r  ++er+ +qC+++++ l+k+ykk+k    +  s ++s+++yf++++
  PGSC0003DMP400054664 142 WSEHETFILLDAWGTRFVRHGRKSLRSEEWQEVAERVsRGSKLERTDTQCRNRLDTLKKKYKKEKMKFAET-SSTTSKWVYFKKMD 226
                           *************************************666789***********************99995.66677********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.272140199IPR017877Myb-like domain
PfamPF138373.9E-20141228No hitNo description
Gene3DG3DSA:1.10.10.609.2E-5142209IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDDIEDNGRY PPNPYGMNQG YESSNRQKLP VHDTSYSRHV DNQYVEEADD DEEVDDEEVD  60
GEEEEEDDDG EENGVQRIGK DVFDDDDDDD DEYGDSQRHQ KKRKLKSLLS SYEFAPRVPP  120
PSTTAATAPK PSFGGRNPLS DWSEHETFIL LDAWGTRFVR HGRKSLRSEE WQEVAERVSR  180
GSKLERTDTQ CRNRLDTLKK KYKKEKMKFA ETSSTTSKWV YFKKMDMLLT STPQKTGVSC  240
GMDSGEYVFM SPKTYLNRAN GLDEMRDSPA NSESADGSED LPPKRSRNVQ PGGNGNGHSF  300
KLIADSIHKF SEIYVKIENS KRQQMMELEK MRMDFHRELE LQKRQIMERA QAEIARIRQG  360
NDEENDLSAE NVSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346580.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM1D3Q30.0M1D3Q3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000805930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-68Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]