PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048954
Common NameLOC102583015
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 416aa    MW: 48785.5 Da    PI: 8.1475
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048954genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix841.9e-26106191187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+l+L+e+r++++++++++ +k+plW+evs+ m +e  ++rs k+C+ek+enl k+ykk+k g+ +r  ++ ++++yf+qlea
  PGSC0003DMP400048954 106 RWPRQETLTLLEVRSQLDSKFKEAIQKGPLWDEVSRIMsEEYRYQRSGKKCREKFENLYKYYKKTKGGKAGR--QDGKHYRYFRQLEA 191
                           8*************************************77789***************************98..55667*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.992105164IPR017877Myb-like domain
CDDcd122031.86E-15106163No hitNo description
PfamPF138373.1E-18106192No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDDHQYGMMD LTQYLNGRPL FPSVSPNLTP DLLCGNQHFD MLMATTTATT TTTHVPQHDN  60
YLPHHHHYHY HHGFLPESST VAAATGASVS GGCTLSALEM EGGNGRWPRQ ETLTLLEVRS  120
QLDSKFKEAI QKGPLWDEVS RIMSEEYRYQ RSGKKCREKF ENLYKYYKKT KGGKAGRQDG  180
KHYRYFRQLE ALYGKTSNTI NTNTFHHQVH YNQEPHHCPK LSDNNLYDSS DSDDSDNSSN  240
DENDDSKRKN IKKKGKRSWK GKIRDFMDIQ MRKLMEKQDI WLEKMMKTIE DKEQERVLRE  300
EEWRKKEEIR LEKQQKFWAD ERAWIEARDA VLIGTLRKLN GEKIMKSSTT NYNDENGSMF  360
YYNKKQKEMN SLSSSCYNNF QIKNEEERRI SYCETSRHVP NIHDTIDDGY VARIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339311.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS03e-86PTL_ARATH; Trihelix transcription factor PTL
TrEMBLM1CQ850.0M1CQ85_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000724040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.12e-55Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]