PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 458aa    MW: 50066.6 Da    PI: 7.0773
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048525genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17129178155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400048525 129 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178
                           78*******************......55************************998 PP

2AP242.22e-13221271155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  PGSC0003DMP400048525 221 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 271
                           89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-16129188IPR016177DNA-binding domain
PfamPF008472.1E-9129178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17130187IPR001471AP2/ERF domain
CDDcd000181.00E-11130188No hitNo description
PROSITE profilePS5103217.82130186IPR001471AP2/ERF domain
SMARTSM003809.6E-32130192IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17221281IPR016177DNA-binding domain
CDDcd000182.40E-25221281No hitNo description
PfamPF008474.9E-9221271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-16222280IPR001471AP2/ERF domain
PROSITE profilePS5103215.514222279IPR001471AP2/ERF domain
SMARTSM003802.1E-31222285IPR001471AP2/ERF domain
PRINTSPR003674.4E-6223234IPR001471AP2/ERF domain
PRINTSPR003674.4E-6261281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA  60
DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV PMEQRIVLGP PQLRQQVKKS  120
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLD  180
ADINFNVSDY HDDLKQMGNF SKEEFVHVLR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ  240
FLGKKYIYLG LFDSEIEAAR AYDKAAIKCN GREAVTNFEL STYEGELSTE ADNGGADHNL  300
DLNLGIAPSV FADDQGGNTC QMGNYVVQCV SNGLPGYGGA MNIPTTTMGG KLLHGHQLLT  360
DRPLLWNGVN TSIFPTLKGT ALGKGIEVDS SPNWTRQDQH PYGGSPSVPL FSTAASSGFA  420
NTTTAAAQLP CFSNGKLPYQ HSPSLANMNF AHYYCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2468790.0FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086400.10.0ethylene-responsive transcription factor RAP2-7-like
RefseqXP_015086406.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLM1CP820.0M1CP82_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000717320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]