PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046169
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 167aa    MW: 18893.3 Da    PI: 10.124
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046169genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.11.6e-3034125266
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 
                            g+kdrhsk+ T +g RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak++i++l+ +                         
  PGSC0003DMP400046169  34 FGGKDRHSKVLTVKGVRDRRVRLSVPTALQLYDLQDKLGLDQPSKVVDWLLNEAKHEIDQLPPLqmppirdqtglpltglrketmvvsd 122
                           689*************************************************************4444444444444333333332221 PP

                   TCP  66 ..s 66 
                             +
  PGSC0003DMP400046169 123 edT 125
                           110 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.1233694IPR017887Transcription factor TCP subgroup
PfamPF036349.7E-3036143IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MITREVDTSD NKIPKKSSWT SFKDPRIVRV SRAFGGKDRH SKVLTVKGVR DRRVRLSVPT  60
ALQLYDLQDK LGLDQPSKVV DWLLNEAKHE IDQLPPLQMP PIRDQTGLPL TGLRKETMVV  120
SDEDTVKLDA RNLDLKDNSN NNNNSNSFSF GLYQNNHSSQ SGIFKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-204195155Putative transcription factor PCF6
5zkt_B7e-204195155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468131e-161AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365661.11e-114PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W57e-41TCP13_ARATH; Transcription factor TCP13
TrEMBLM1CIV71e-117M1CIV7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000683321e-113(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-43plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  4. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]