PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045753
Common NameLOC102603585
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 173aa    MW: 19308.6 Da    PI: 4.6105
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045753genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.76.8e-1423118797
                 NF-YB   7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                            lP + v r++k+ l    +++ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f + +eplk+ l+ +
  PGSC0003DMP400045753  23 GLPKTIVRRVVKEKLSqlsTDTDISllRDSLLAFSESARLFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGF 111
                           5777888888887654111566666446777888999**************************************************** PP

                 NF-YB  91 relegek 97 
                           re ++++
  PGSC0003DMP400045753 112 REKNSKR 118
                           **88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-3115155IPR009072Histone-fold
SuperFamilySSF471133.52E-2423132IPR009072Histone-fold
PfamPF008081.5E-82492IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAEIEKQKEK VVAEATVQID QEGLPKTIVR RVVKEKLSQL STDTDISLLR DSLLAFSESA  60
RLFIHYLSAT ANDICKESKR QTINAEDVFK ALEEIEFPEL IEPLKASLEG FREKNSKRKS  120
VSSKSPESNK KAKLKEPVEN GKGKMKEQPS DNENEDAQAG EEVNEVEDSV DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A2e-111613410125DNA polymerase epsilon subunit D
5y27_A2e-111613410125DNA polymerase epsilon subunit D
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045753
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170047e-86AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence.
GenBankHG9755237e-86HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362889.11e-119PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLM1CHV01e-118M1CHV0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000677671e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-30nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]