PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045299
Common NameLOC102589240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 328aa    MW: 35025.6 Da    PI: 7.9123
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045299genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.3e-3940159589
                   TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                           k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++  ++s +ss+ + s++    
  PGSC0003DMP400045299  40 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsks 128
                           899***************************************************************99987777777777444445555 PP

                   TCP  89 ..............................k 89 
                                                         +
  PGSC0003DMP400045299 129 aplfihggattmlgfhhqipgnsfgqdpdeN 159
                           5666666666666666656566664433220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.6524397IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-3843184IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEFRESNSKN NQDGGSNSNN NNNNNSNENN NNAISTKVVK KPSKDRHTKV DGRGRRIRMP  60
ALCAARVFQL TKELGHKSDG ETIEWLLQQA EPSIIAATGT GTIPANFSTL NVSLRSSGTT  120
ISAPPSKSAP LFIHGGATTM LGFHHQIPGN SFGQDPDENF MKKRYREDTT AATTSPSSSS  180
AKPERTGVQG HEPDQESKPG SLNPSSYIPA PAMWAVGPAA GNVGNTFWML PGTSSTMQRI  240
GGFELPGGGR FSPVQLGSMF LQQPQPVQQL GLGVTETNMG MLASMNAYNS SSRGSGIDLG  300
MNLEQHHHHQ NQPQGSDSGD ENHKDSQ*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045299
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095130.0AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence.
GenBankAC2110870.0AC211087.2 Solanum lycopersicum chromosome 6 clone C06SLm0132E21, complete sequence.
GenBankGQ4963310.0GQ496331.1 Solanum lycopersicum TCP transcription factor 13 (TCP13) mRNA, complete cds.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353608.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5183e-66TCP8_ARATH; Transcription factor TCP8
TrEMBLM1CGS50.0M1CGS5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000671500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.12e-58TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]