PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040865
Common NameLOC102595429
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 280aa    MW: 32430.8 Da    PI: 6.5147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040865genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17154204255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y GVr ++ +g+++AeIrd + ng   r++lg+f t eeAa a+++a++ ++g
  PGSC0003DMP400040865 154 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFNTGEEAALAYDQAALTMRG 204
                           799******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-27153212No hitNo description
Gene3DG3DSA:3.30.730.102.7E-28154213IPR001471AP2/ERF domain
PROSITE profilePS5103221.47154212IPR001471AP2/ERF domain
SMARTSM003805.6E-34154218IPR001471AP2/ERF domain
PfamPF008473.5E-13154204IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21154213IPR016177DNA-binding domain
PRINTSPR003677.9E-9155166IPR001471AP2/ERF domain
PRINTSPR003677.9E-9178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEFSSPKIQY PNFNFFQDQS PLPWNDQHFL DEYMTNYPWD VDSIDQNNDH YLPRSSSFSE  60
NNSSKKCYPL KVDYIDQNND HYLSKSSSFS TSKGSYTWEV ASSNQKDNDH QLPRSFSYSE  120
DTNSSKESNN HHDIEEVTSH HDNNNSTKLE EKKHYIGVRK RPWGKYAAEI RDSTRNGIRV  180
WLGTFNTGEE AALAYDQAAL TMRGPLALLN FPMDKVRESL ENIKYICEDG ISPAAVLKAT  240
NKMRCVKHKR NRKKRKRENN VFVFEDLGAE LLDELLMST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27153213161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246256KHKRNRKKRKR
2248256KRNRKKRKR
3251256RKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040865
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-157HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346761.10.0PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLM1C6B70.0M1C6B7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000607320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-41ethylene response factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]