PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 526aa    MW: 58453.8 Da    PI: 7.2898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031503genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30234293159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  PGSC0003DMP400031503 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCIQDMSILITTYEGTHNHP 293
                           58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-31220295IPR003657WRKY domain
SuperFamilySSF1182902.88E-27226295IPR003657WRKY domain
PROSITE profilePS5081128.242229295IPR003657WRKY domain
SMARTSM007741.5E-36234294IPR003657WRKY domain
PfamPF031067.7E-27235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEAVFRKSIH GGVVKQDIKI KAGEEGFVED INDLKVGKER KSVHNEEDNS KSSQQKDLPG  60
DKEDDQLESA KADMEEVREE NQRLKKHLDR IMKDYRNLQM QFHEVAQRDT EKPNNVKHDE  120
AELVSLSLGR TSSDTKKELS KLILSKKEND EKEEDNLTLA LDCKFQSSTK SSPSNLSPEN  180
SLGDVKDDEK GADQTWPPHK VLKTMRNEEE DMVQQNPTKR AKVSVRVRCD TPTMNDGCQW  240
RKYGQKIAKG NPCPRAYYRC TVAPNCPVRK QVQRCIQDMS ILITTYEGTH NHPLPHSATS  300
MAFTTSAAAS MLLSSSSSSG SGPTTSATTT ALNYYLSDNS KPNPFYNLPN SSISQYPTIT  360
LDLTSNSSPS SFPGQHHRTI ASSNNYHSRY NNNNNNNNLS TNILNFSSFE SNHLLPMSWS  420
NGNNQTYHKN QDIHSQSYLQ NNIKSAASAQ TLLPQDTIAA ATKAITSDPK FQSALAVALT  480
SIIGSRGGNH HIDEKSGQNL KVTEPFPVLC SFPSISPGDH KDYTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-192342951474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031503
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0174210.0GU017421.1 Solanum lycopersicum WRKY72 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344383.10.0PREDICTED: probable WRKY transcription factor 61
SwissprotA0A3Q7GFB50.0WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLM1BJA00.0M1BJA0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000465700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-65WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]