PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023883
Common NameLOC102591700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 225aa    MW: 25029.7 Da    PI: 4.7194
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023883genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB114.27.1e-3654144294
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           +eqd+f+P  nv+rim++++P + kis+dak t+++c+sefi fvt ea+ +cqre+r+ti+ +d+ w  +++Gf+dy+epl +yl +y
  PGSC0003DMP400023883  54 QEQDQFMP--NVARIMHRTFPPHIKISDDAKWTMHDCISEFICFVTYEANARCQREQRNTITDEDVHWVTSKFGFDDYIEPLPLYLPRY 140
                           799***99..******************************************************************************* PP

                 NF-YB  91 rele 94 
                            e +
  PGSC0003DMP400023883 141 HEDD 144
                           9866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-3053145IPR009072Histone-fold
SuperFamilySSF471131.61E-2259143IPR009072Histone-fold
PfamPF008081.4E-1462119IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.3E-785103No hitNo description
PRINTSPR006154.3E-7104122No hitNo description
PRINTSPR006154.3E-7123141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDNGNHVGGS GNGGFHSYRR SPQPNPAHSP SSDMEMILEL PSHLNQAVVE GIIQEQDQFM  60
PNVARIMHRT FPPHIKISDD AKWTMHDCIS EFICFVTYEA NARCQREQRN TITDEDVHWV  120
TSKFGFDDYI EPLPLYLPRY HEDDGGECGS LIGESLLKRP MVDTASNCNI TPYHQPPNFP  180
MAHHHLGYPP PMGNGDMQGD ASNGSTSQCA MDNDVEFPSE GGKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-3953142697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2040821e-169AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence.
GenBankHG9755171e-169HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356441.21e-170PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168329.11e-170PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168330.11e-170PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168331.11e-170PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotQ84W663e-40NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLM1B1V01e-168M1B1V0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000351291e-169(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-41nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  3. Kim HU, et al.
    Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues.
    FEBS Open Bio, 2013. 4: p. 25-32
    [PMID:24363987]
  4. Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
    Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
    Mol Plant, 2017. 10(4): p. 645-648
    [PMID:27871811]
  5. Li D, et al.
    MYB89 Transcription Factor Represses Seed Oil Accumulation.
    Plant Physiol., 2017. 173(2): p. 1211-1225
    [PMID:27932421]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  7. Han JD, et al.
    Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.
    Front Plant Sci, 2017. 8: p. 439
    [PMID:28421087]