PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023799
Common NameLOC107062261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 158aa    MW: 17968 Da    PI: 9.1876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023799genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-193182256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr +  +g+++AeIrdp+ +g  +r +lg+f+tae+Aa+a+++a+ +l+g+
  PGSC0003DMP400023799 31 KYRGVRKRT-WGKFAAEIRDPTRQG--ARQWLGTFDTAEDAARAYDKAAFNLRGH 82
                          8*****887.**********96544..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-123182IPR001471AP2/ERF domain
PROSITE profilePS5103223.7233189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-313191IPR001471AP2/ERF domain
SMARTSM003802.9E-353195IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-233190IPR016177DNA-binding domain
CDDcd000181.78E-293190No hitNo description
PRINTSPR003672.8E-103243IPR001471AP2/ERF domain
PRINTSPR003672.8E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDSSSSSSSS KGKKIIQLEK ENGKDSNDLI KYRGVRKRTW GKFAAEIRDP TRQGARQWLG  60
TFDTAEDAAR AYDKAAFNLR GHLATLNFPN EYYSKLNDPH YYNYRTSLNV NVPSRSLERG  120
ISSIGHQDKE IIEFEYLDDS VLEELLGAED PKKMIRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-303114114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023799
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168164.11e-113PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1B1M31e-112M1B1M3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000349841e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-38ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]