PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023722
Common NameLOC102590340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 126aa    MW: 14285.7 Da    PI: 6.9572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023722genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-21557256
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr ++ +g+++AeIrd  +++    r++lg+fg+aeeAa+a+++a+ +++g+
  PGSC0003DMP400023722  5 KYRGVRKRP-WGKYAAEIRDtNRQG--GVRVWLGTFGSAEEAARAYDKAAYNMRGH 57
                          8********.**********33333..4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.853564IPR001471AP2/ERF domain
PfamPF008477.7E-16557IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21565IPR016177DNA-binding domain
SMARTSM003801.6E-31570IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-29566IPR001471AP2/ERF domain
CDDcd000187.44E-28565No hitNo description
PRINTSPR003676.2E-11617IPR001471AP2/ERF domain
PRINTSPR003676.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDEVKYRGVR KRPWGKYAAE IRDTNRQGGV RVWLGTFGSA EEAARAYDKA AYNMRGHLAI  60
LNFPEEYNLP RSSSHFYDNS QSMASSSSSN VHARNDTGQV LELEYLDDNV LEELLNCDQH  120
ANKRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-34512514129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023722
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-132HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356111.14e-90PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1B1F29e-89M1B1F2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000348711e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-27ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]